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gcvT [2018-05-30 17:47:33]
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gcvT [2018-05-30 17:47:33]

aminomethyltransferase (glycine cleavage system protein T)
locus
BSU24570
pI
5.73
mw
39.62 kDa
protein length
362 aa Sequence Blast
gene length
1086 bp Sequence Blast
function
glycine utilization
product
aminomethyltransferase (glycine cleavage system protein T)
essential
no
ec
2.1.2.10
synonyms
yqhI
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.3|Amino acid/ nitrogen metabolism] → [category|SW 2.3.2|Utilization of amino acids] → [category|SW 2.3.2.8|Utilization of threonine/ glycine]

    • Gene

    Coordinates
    2,548,245 → 2,549,333

    The protein

    Catalyzed reaction/ biological activity

  • [Protein]-S(8)-aminomethyldihydrolipoyllysine + tetrahydrofolate = [protein]-dihydrolipoyllysine + 5,10-methylenetetrahydrofolate + NH3 (according to Swiss-Prot)

    • Protein family

  • gcvT family (according to Swiss-Prot)

    • [SW|Cofactors]

  • tetrahydrofolate

    • Structure

  • [PDB|1YX2]

    • Expression and Regulation

    Operons

    genes
    [gene|F6F449170276055E6D60D89E9E17A152A82CA166|gcvT]-[gene|DB0618EBA12013842ED3972165D0276F438D8EC1|gcvPA]-[gene|20175DF9FCF07C34A05C572B089C33D1E1FE6DF2|gcvPB]
    description
    [Pubmed|15472076]

    regulatory mechanism

  • [regulon|Gly-box|Gly-box]: termination, [pubmed|31992591], in [regulon|Gly-box|Gly-box]

    • regulation

  • induced by glycine [Pubmed|15472076]
  • the [SW|Gly-box] RNA is degraded by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [pubmed|29794222]
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    Biological materials

    Mutant

  • MGNA-C428 (yqhI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2426 NBRP B. subtilis, Japan]
  • BKE24570 (Δ[gene|F6F449170276055E6D60D89E9E17A152A82CA166|gcvT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE24570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTAATTCCTCCCCTTTA, downstream forward: _UP4_TAATATTTTTTCTTGGAGAG
  • BKK24570 (Δ[gene|F6F449170276055E6D60D89E9E17A152A82CA166|gcvT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK24570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTAATTCCTCCCCTTTA, downstream forward: _UP4_TAATATTTTTTCTTGGAGAG

    • lacZ fusion

  • pGP431 (in [protein|search|pAC7]), available in [SW|Stülke] lab

    • References

  • 15096624,15472076,23249744,23721735, 29089431